medRxiv [Preprint]. 2026 Feb 5:2026.02.04.26343575. doi: 10.64898/2026.02.04.26343575. ABSTRACT Many non-coding variants influence complex traits and diseases through gene regulation, yet the mechanisms linking these variants to downstream biology remain poorly understood. Here, we present eQTLGen Phase 2 , a comprehensive genome-wide analysis of gene expression quantitative trait loci (eQTLs) in…

